Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010363.1 Corchorus olitorius cultivar O-4 contig10395, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3838
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31


Found at i:2805 original size:20 final size:20

Alignment explanation


    Indices: 2777--2814  Score: 67
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       2767 ACTTGCCAAA

                *               
       2777 CATAGCCTTACCGCAGGAAC
          1 CATAACCTTACCGCAGGAAC

                              
       2797 CATAACCTTACCGCAGGA
          1 CATAACCTTACCGCAGGA

       2815 TGTATATATA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.32, C:0.34, G:0.18, T:0.16


Consensus pattern (20 bp):   
CATAACCTTACCGCAGGAAC

Found at i:3642 original size:5 final size:5

Alignment explanation


    Indices: 3632--3676  Score: 90
    Period size: 5  Copynumber: 9.0  Consensus size: 5

       3622 TTTGTTTGTT

                                                                 
       3632 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
          1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA

       3677 AAGGCTGCTA


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   40  1.00

ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40


Consensus pattern (5 bp):   
TATAA

Done.