Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010365.1 Corchorus olitorius cultivar O-4 contig10397, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 866

Length: 1444
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33


Found at i:790 original size:46 final size:46

Alignment explanation


    Indices: 740--851  Score: 188
    Period size: 46  Copynumber: 2.4  Consensus size: 46

        730 TGGTAAGTGT

                                            *             
        740 TTTATGAAGTTTTTGAATTAGGAATTTACAATTCATAACTAAGTAC
          1 TTTATGAAGTTTTTGAATTAGGAATTTACAATACATAACTAAGTAC

                                                        * 
        786 TTTATGAAGTTTTTGAATTAGGAATTTACAATACATAACTAAGTGC
          1 TTTATGAAGTTTTTGAATTAGGAATTTACAATACATAACTAAGTAC

                      *         
        832 TTTATGAATGGTTTTGAATT
          1 TTTATGAA-GTTTTTGAATT

        852 TATGCAGAGC


Statistics
Matches: 62,  Mismatches: 3, Indels: 1
        0.94            0.05        0.02

Matches are distributed among these distances:
  46   52  0.84
  47   10  0.16

ACGTcount: A:0.35, C:0.07, G:0.15, T:0.43


Consensus pattern (46 bp):   
TTTATGAAGTTTTTGAATTAGGAATTTACAATACATAACTAAGTAC
Done.