Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010366.1 Corchorus olitorius cultivar O-4 contig10398, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3619
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33


Found at i:1220 original size:27 final size:27

Alignment explanation


    Indices: 1177--1249  Score: 76
    Period size: 26  Copynumber: 2.7  Consensus size: 27

       1167 GAGTGTACTT

                       **             *
       1177 AAAATGACCAATGTGCCCCTAAATATG
          1 AAAATGACCAAAATGCCCCTAAATATA

            *                   * * *  
       1204 CAAATGACCAAAATG-CCCTTAGTGTA
          1 AAAATGACCAAAATGCCCCTAAATATA

                                
       1230 AAAATGACCAAAATGCCCCT
          1 AAAATGACCAAAATGCCCCT

       1250 GGGTGACTCT


Statistics
Matches: 37,  Mismatches: 8, Indels: 2
        0.79            0.17        0.04

Matches are distributed among these distances:
  26   21  0.57
  27   16  0.43

ACGTcount: A:0.41, C:0.25, G:0.14, T:0.21


Consensus pattern (27 bp):   
AAAATGACCAAAATGCCCCTAAATATA
Done.