Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010371.1 Corchorus olitorius cultivar O-4 contig10403, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3291
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.33


Found at i:2431 original size:23 final size:23

Alignment explanation


    Indices: 2404--2459  Score: 103
    Period size: 23  Copynumber: 2.4  Consensus size: 23

       2394 TCAAGCAGGT

                   *               
       2404 TCGGGTTTTGCCCCTCAGGTCAC
          1 TCGGGTTATGCCCCTCAGGTCAC

                                   
       2427 TCGGGTTATGCCCCTCAGGTCAC
          1 TCGGGTTATGCCCCTCAGGTCAC

                      
       2450 TCGGGTTATG
          1 TCGGGTTATG

       2460 GGTCATTCGG


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  23   32  1.00

ACGTcount: A:0.11, C:0.30, G:0.29, T:0.30


Consensus pattern (23 bp):   
TCGGGTTATGCCCCTCAGGTCAC
Done.