Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010380.1 Corchorus olitorius cultivar O-4 contig10412, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3031
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30


Found at i:249 original size:16 final size:16

Alignment explanation


    Indices: 224--254  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        214 CAGATACTTA

                            
        224 TGATGATTTGCATGAC
          1 TGATGATTTGCATGAC

                 *         
        240 TGATGCTTTGCATGA
          1 TGATGATTTGCATGA

        255 ATGCATTCGC


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.23, C:0.13, G:0.26, T:0.39


Consensus pattern (16 bp):   
TGATGATTTGCATGAC
Done.