Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010382.1 Corchorus olitorius cultivar O-4 contig10414, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1949
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28


Found at i:980 original size:24 final size:24

Alignment explanation


    Indices: 948--1005  Score: 98
    Period size: 24  Copynumber: 2.4  Consensus size: 24

        938 AATGGGAATT

                                    
        948 GGTGGAGGAATATTCCGATTCTGA
          1 GGTGGAGGAATATTCCGATTCTGA

                     * *            
        972 GGTGGAGGAGTGTTCCGATTCTGA
          1 GGTGGAGGAATATTCCGATTCTGA

                      
        996 GGTGGAGGAA
          1 GGTGGAGGAA

       1006 GTGCGGGTGG


Statistics
Matches: 31,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  24   31  1.00

ACGTcount: A:0.22, C:0.10, G:0.41, T:0.26


Consensus pattern (24 bp):   
GGTGGAGGAATATTCCGATTCTGA
Done.