Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01010384.1 Corchorus olitorius cultivar O-4 contig10416, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3240
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Found at i:1209 original size:173 final size:173
Alignment explanation
Indices: 920--1265 Score: 683
Period size: 173 Copynumber: 2.0 Consensus size: 173
910 GCATGCCTTC
920 GACATTTACTAGAGACAATGTGTTTGAAGTGTACAACATGGTGCACAGGCTTGATGATTGGCGCC
1 GACATTTACTAGAGACAATGTGTTTGAAGTGTACAACATGGTGCACAGGCTTGATGATTGGCGCC
985 AGCCATTCCTTGAATATCTTCAAAACCCATCAACAAGGGTCACTAGAAGGATAAGGACTTTGGCT
66 AGCCATTCCTTGAATATCTTCAAAACCCATCAACAAGGGTCACTAGAAGGATAAGGACTTTGGCT
1050 GTGCACTACACTGTCTTAGCTGATGAATTATATCGAAAAGACT
131 GTGCACTACACTGTCTTAGCTGATGAATTATATCGAAAAGACT
1093 GACATTTACTAGAGACAATGTGTTTGAAGTGTACAACATGGTGCACAGGCTTGATGATTGGCGCC
1 GACATTTACTAGAGACAATGTGTTTGAAGTGTACAACATGGTGCACAGGCTTGATGATTGGCGCC
*
1158 AGCCATTCCTTGAATATCTTCTAAACCCATCAACAAGGGTCACTAGAAGGATAAGGACTTTGGCT
66 AGCCATTCCTTGAATATCTTCAAAACCCATCAACAAGGGTCACTAGAAGGATAAGGACTTTGGCT
1223 GTGCACTACACTGTCTTAGCTGATGAATTATATCGAAAAGACT
131 GTGCACTACACTGTCTTAGCTGATGAATTATATCGAAAAGACT
1266 TAGACGAATC
Statistics
Matches: 172, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
173 172 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (173 bp):
GACATTTACTAGAGACAATGTGTTTGAAGTGTACAACATGGTGCACAGGCTTGATGATTGGCGCC
AGCCATTCCTTGAATATCTTCAAAACCCATCAACAAGGGTCACTAGAAGGATAAGGACTTTGGCT
GTGCACTACACTGTCTTAGCTGATGAATTATATCGAAAAGACT
Done.