Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010386.1 Corchorus olitorius cultivar O-4 contig10418, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19038

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2771--2950
96
1.9
92
94
4
315
32
27
8
31
1.86
6554--8152
333
4.8
329
77
8
1441
32
14
15
38
1.87
8593--8624
2
16.0
2
100
0
64
50
0
0
50
1.00
8677--8706
2
15.0
2
100
0
60
50
0
0
50
1.00
8774--8955
22
8.4
20
68
18
71
37
14
8
39
1.76
8852--9116
22
12.0
22
68
9
135
37
16
9
36
1.81
8940--9045
46
2.4
44
87
3
140
38
13
14
33
1.84
15952--15981
12
2.5
12
100
0
60
33
10
6
50
1.62
16101--16125
13
1.9
13
100
0
50
24
32
8
36
1.84
18265--18503
119
2.0
119
100
0
478
23
18
15
42
1.88

Tables:   1

The End!