Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010390.1 Corchorus olitorius cultivar O-4 contig10422, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 934

Length: 1557
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32


Found at i:605 original size:15 final size:15

Alignment explanation


    Indices: 585--616  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        575 AAACTAAGTG

                           
        585 GAGCTTGTCGATTTT
          1 GAGCTTGTCGATTTT

                    *      
        600 GAGCTTGTTGATTTT
          1 GAGCTTGTCGATTTT

              
        615 GA
          1 GA

        617 ACCCCCAAGG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.16, C:0.09, G:0.28, T:0.47


Consensus pattern (15 bp):   
GAGCTTGTCGATTTT
Done.