Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010392.1 Corchorus olitorius cultivar O-4 contig10424, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3402
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:2394 original size:34 final size:34

Alignment explanation


    Indices: 2351--2420  Score: 122
    Period size: 34  Copynumber: 2.1  Consensus size: 34

       2341 GAAATCACCG

                                              
       2351 GGGTTTAAGAAGGAGCGGGGGCCTTAGAGCCCCT
          1 GGGTTTAAGAAGGAGCGGGGGCCTTAGAGCCCCT

                      *                  *    
       2385 GGGTTTAAGAGGGAGCGGGGGCCTTAGAGTCCCT
          1 GGGTTTAAGAAGGAGCGGGGGCCTTAGAGCCCCT

              
       2419 GG
          1 GG

       2421 ATCGATGATA


Statistics
Matches: 34,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  34   34  1.00

ACGTcount: A:0.19, C:0.19, G:0.44, T:0.19


Consensus pattern (34 bp):   
GGGTTTAAGAAGGAGCGGGGGCCTTAGAGCCCCT
Done.