Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010393.1 Corchorus olitorius cultivar O-4 contig10425, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2095
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32


Found at i:550 original size:2 final size:2

Alignment explanation


    Indices: 543--580  Score: 76
    Period size: 2  Copynumber: 19.0  Consensus size: 2

        533 ATTAACTTCC

                                                                    
        543 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        581 CCAAATAAAC


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   36  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:1765 original size:22 final size:21

Alignment explanation


    Indices: 1735--1777  Score: 59
    Period size: 22  Copynumber: 2.0  Consensus size: 21

       1725 CAGTACGAGT

                *                 
       1735 ATGAGTATATAAGATTTGATAA
          1 ATGAATATATAAGATTT-ATAA

                       *         
       1757 ATGAATATATACGATTTATAA
          1 ATGAATATATAAGATTTATAA

       1778 CAAATTAATG


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  21    4  0.21
  22   15  0.79

ACGTcount: A:0.47, C:0.02, G:0.14, T:0.37


Consensus pattern (21 bp):   
ATGAATATATAAGATTTATAA
Done.