Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010397.1 Corchorus olitorius cultivar O-4 contig10429, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2704
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28


Found at i:337 original size:24 final size:23

Alignment explanation


    Indices: 310--361  Score: 59
    Period size: 23  Copynumber: 2.2  Consensus size: 23

        300 AGGTTGCGCA

                      *             
        310 AACTTCAGGGTTCAACCTGGCCCC
          1 AACTTCAGGGGT-AACCTGGCCCC

                 *        **       
        334 AACTTGAGGGGTAAGTTGGCCCC
          1 AACTTCAGGGGTAACCTGGCCCC

                 
        357 AACTT
          1 AACTT

        362 GGAGTTTGTC


Statistics
Matches: 24,  Mismatches: 4, Indels: 1
        0.83            0.14        0.03

Matches are distributed among these distances:
  23   14  0.58
  24   10  0.42

ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23


Consensus pattern (23 bp):   
AACTTCAGGGGTAACCTGGCCCC
Done.