Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010399.1 Corchorus olitorius cultivar O-4 contig10431, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 977

Length: 1629
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30


Found at i:362 original size:14 final size:13

Alignment explanation


    Indices: 338--374  Score: 56
    Period size: 14  Copynumber: 2.8  Consensus size: 13

        328 TAAAGGACGT

                       * 
        338 TTTTCAAAAATTA
          1 TTTTCAAAAATGA

                          
        351 TTTTCAAGAAATGA
          1 TTTTCAA-AAATGA

                      
        365 TTTTCAAAAA
          1 TTTTCAAAAA

        375 GGTTTTGAGT


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  13   10  0.45
  14   12  0.55

ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41


Consensus pattern (13 bp):   
TTTTCAAAAATGA

Found at i:1047 original size:23 final size:22

Alignment explanation


    Indices: 1015--1059  Score: 63
    Period size: 23  Copynumber: 2.0  Consensus size: 22

       1005 GCAGCAATCT

                       *          
       1015 AAAAAAAAAGAGAAAGCAAAAG
          1 AAAAAAAAAGAAAAAGCAAAAG

                            *      
       1037 AAAAAAGAAAGAAAAATCAAAAG
          1 AAAAAA-AAAGAAAAAGCAAAAG

       1060 GTTCAAATCG


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  22    6  0.30
  23   14  0.70

ACGTcount: A:0.78, C:0.04, G:0.16, T:0.02


Consensus pattern (22 bp):   
AAAAAAAAAGAAAAAGCAAAAG
Done.