Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010409.1 Corchorus olitorius cultivar O-4 contig10441, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2478
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29


Found at i:369 original size:21 final size:22

Alignment explanation


    Indices: 345--386  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 22

        335 TTTGCCTCAT

                            *     
        345 GCATTCATTCAT-CATGCCATG
          1 GCATTCATTCATGCATCCCATG

                                 
        366 GCATTCATTCATGCATCCCAT
          1 GCATTCATTCATGCATCCCAT

        387 TAAAGCCTAC


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21   12  0.63
  22    7  0.37

ACGTcount: A:0.24, C:0.31, G:0.12, T:0.33


Consensus pattern (22 bp):   
GCATTCATTCATGCATCCCATG
Done.