Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001041.1 Corchorus olitorius cultivar O-4 contig01041, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 681

Length: 1136
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30


Found at i:383 original size:33 final size:32

Alignment explanation


    Indices: 344--432  Score: 97
    Period size: 33  Copynumber: 2.7  Consensus size: 32

        334 GTTGCATGAG

                                    *        
        344 AACAACACCTAAAACAGATTTAGTGTCATCACA
          1 AACAACA-CTAAAACAGATTTAGTATCATCACA

                         **  *        *   *  
        377 AACAACACTCAAATTAGGTTTAGTATTATCGCA
          1 AACAACACT-AAAACAGATTTAGTATCATCACA

                                   
        410 AACAACATCTAAAACAGATTTAG
          1 AACAACA-CTAAAACAGATTTAG

        433 AATTACTCTT


Statistics
Matches: 45,  Mismatches: 9, Indels: 4
        0.78            0.16        0.07

Matches are distributed among these distances:
  32    2  0.04
  33   41  0.91
  34    2  0.04

ACGTcount: A:0.45, C:0.20, G:0.10, T:0.25


Consensus pattern (32 bp):   
AACAACACTAAAACAGATTTAGTATCATCACA
Done.