Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010426.1 Corchorus olitorius cultivar O-4 contig10458, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2485
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37


Found at i:409 original size:58 final size:58

Alignment explanation


    Indices: 311--420  Score: 150
    Period size: 58  Copynumber: 1.9  Consensus size: 58

        301 ATCATGTCTC

                 *                   *                                
        311 GGTCCTAAAACGTCTGTTTTAGACATCTAATAAAAAAACATGTCACTAGATAAGCCTT
          1 GGTCCGAAAACGTCTGTTTTAGACACCTAATAAAAAAACATGTCACTAGATAAGCCTT

                            *     *             *           *    
        369 GGTCCGAAAACGTCTTTTTTTATACACCTAAT-AAAGAACATGTCACTTGATA
          1 GGTCCGAAAACGTC-TGTTTTAGACACCTAATAAAAAAACATGTCACTAGATA

        421 TTTCATTAAT


Statistics
Matches: 45,  Mismatches: 6, Indels: 2
        0.85            0.11        0.04

Matches are distributed among these distances:
  58   31  0.69
  59   14  0.31

ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31


Consensus pattern (58 bp):   
GGTCCGAAAACGTCTGTTTTAGACACCTAATAAAAAAACATGTCACTAGATAAGCCTT
Done.