Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010430.1 Corchorus olitorius cultivar O-4 contig10462, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3283
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.32


Found at i:2576 original size:25 final size:25

Alignment explanation


    Indices: 2540--2589  Score: 91
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       2530 TTAGTGGATT

                                     
       2540 AAATCAGATTTGAGCTACATGAATG
          1 AAATCAGATTTGAGCTACATGAATG

                   *                 
       2565 AAATCAGCTTTGAGCTACATGAATG
          1 AAATCAGATTTGAGCTACATGAATG

       2590 CAAAATACTA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28


Consensus pattern (25 bp):   
AAATCAGATTTGAGCTACATGAATG
Done.