Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010431.1 Corchorus olitorius cultivar O-4 contig10463, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1720
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:162 original size:28 final size:28

Alignment explanation


    Indices: 131--218  Score: 74
    Period size: 30  Copynumber: 3.1  Consensus size: 28

        121 GGTCATTTAG

                                        
        131 GGGGATTTTGGTCATTTTTGCATATCCA
          1 GGGGATTTTGGTCATTTTTGCATATCCA

                       *         *         
        159 GGGGCATTTTTAGTCATTTTTACACTA---A
          1 GGGG-A-TTTTGGTCATTTTTGCA-TATCCA

               *              *   *    *
        187 GGGCATTTTGGTCATTTTGGCACATCCG
          1 GGGGATTTTGGTCATTTTTGCATATCCA

                
        215 GGGG
          1 GGGG

        219 GGCATTTGAG


Statistics
Matches: 45,  Mismatches: 9, Indels: 12
        0.68            0.14        0.18

Matches are distributed among these distances:
  25    1  0.02
  26   14  0.31
  27    1  0.02
  28   11  0.24
  29    1  0.02
  30   15  0.33
  31    2  0.04

ACGTcount: A:0.18, C:0.16, G:0.27, T:0.39


Consensus pattern (28 bp):   
GGGGATTTTGGTCATTTTTGCATATCCA
Done.