Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010434.1 Corchorus olitorius cultivar O-4 contig10466, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3657
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30


Found at i:749 original size:26 final size:26

Alignment explanation


    Indices: 716--770  Score: 110
    Period size: 26  Copynumber: 2.1  Consensus size: 26

        706 CATGAAAAAC

                                      
        716 TTACATGAACGTAGTGGATTAGCACT
          1 TTACATGAACGTAGTGGATTAGCACT

                                      
        742 TTACATGAACGTAGTGGATTAGCACT
          1 TTACATGAACGTAGTGGATTAGCACT

               
        768 TTA
          1 TTA

        771 TATTAGGACC


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   29  1.00

ACGTcount: A:0.31, C:0.15, G:0.22, T:0.33


Consensus pattern (26 bp):   
TTACATGAACGTAGTGGATTAGCACT
Done.