Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010436.1 Corchorus olitorius cultivar O-4 contig10468, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10120
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33


Found at i:1928 original size:2 final size:2

Alignment explanation


    Indices: 1923--1975  Score: 79
    Period size: 2  Copynumber: 26.5  Consensus size: 2

       1913 ACAAGAAGTC

                         *     *  *                                       
       1923 TA TA TA TA TG TA TG TG TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

                            
       1965 TA TA TA TA TA T
          1 TA TA TA TA TA T

       1976 TGATAAATGG


Statistics
Matches: 47,  Mismatches: 4, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   2   47  1.00

ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51


Consensus pattern (2 bp):   
TA

Done.