Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010437.1 Corchorus olitorius cultivar O-4 contig10469, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10940
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32


Found at i:3290 original size:19 final size:19

Alignment explanation


    Indices: 3266--3302  Score: 56
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       3256 CTGTTTAGTA

                    *    *     
       3266 ACTGTACATATGATATTAC
          1 ACTGTACAGATGAGATTAC

                              
       3285 ACTGTACAGATGAGATTA
          1 ACTGTACAGATGAGATTA

       3303 TTAGAGCAGC


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   16  1.00

ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32


Consensus pattern (19 bp):   
ACTGTACAGATGAGATTAC

Found at i:10911 original size:2 final size:2

Alignment explanation


    Indices: 10900--10940  Score: 75
    Period size: 2  Copynumber: 21.0  Consensus size: 2

      10890 TTTATTTATT

                                                                          
      10900 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA


Statistics
Matches: 38,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
   1    1  0.03
   2   37  0.97

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
TA

Done.