Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010439.1 Corchorus olitorius cultivar O-4 contig10471, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7242
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32


Found at i:2427 original size:20 final size:18

Alignment explanation


    Indices: 2402--2444  Score: 50
    Period size: 18  Copynumber: 2.3  Consensus size: 18

       2392 TAGTAAGTAA

                              * 
       2402 GGTTTACTGTACTAAATTTG
          1 GGTTTACTG-A-TAAATTAG

                  *           
       2422 GGTTTAGTGATAAATTAG
          1 GGTTTACTGATAAATTAG

                 
       2440 GGTTT
          1 GGTTT

       2445 TGATTCGAGA


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  18   12  0.57
  19    1  0.05
  20    8  0.38

ACGTcount: A:0.26, C:0.05, G:0.26, T:0.44


Consensus pattern (18 bp):   
GGTTTACTGATAAATTAG

Found at i:6649 original size:19 final size:21

Alignment explanation


    Indices: 6625--6663  Score: 64
    Period size: 19  Copynumber: 2.0  Consensus size: 21

       6615 AAATTATTTG

                                 
       6625 TTATTTA-TATTTT-TTTTAT
          1 TTATTTACTATTTTGTTTTAT

                                
       6644 TTATTTACTATTTTGTTTTA
          1 TTATTTACTATTTTGTTTTA

       6664 CGTAAAAATT


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  19    7  0.39
  20    6  0.33
  21    5  0.28

ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74


Consensus pattern (21 bp):   
TTATTTACTATTTTGTTTTAT
Done.