Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001044.1 Corchorus olitorius cultivar O-4 contig01044, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1011
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.46


Found at i:939 original size:24 final size:23

Alignment explanation


    Indices: 918--964  Score: 69
    Period size: 24  Copynumber: 2.0  Consensus size: 23

        908 TATTATTTCA

                                   
        918 TTTAGT-AATAATTTGATAATTT
          1 TTTAGTAAATAATTTGATAATTT

               *                    
        940 TTTGGTGAAATAATTTGATAATTT
          1 TTTAGT-AAATAATTTGATAATTT

             
        964 T
          1 T

        965 ACTTCATAAT


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  22    5  0.23
  24   17  0.77

ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53


Consensus pattern (23 bp):   
TTTAGTAAATAATTTGATAATTT
Done.