Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010448.1 Corchorus olitorius cultivar O-4 contig10480, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2907
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.33


Found at i:97 original size:13 final size:13

Alignment explanation


    Indices: 79--103  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

         69 ACGCTGATTA

                         
         79 TCAGATTTAGTAT
          1 TCAGATTTAGTAT

                        
         92 TCAGATTTAGTA
          1 TCAGATTTAGTA

        104 ATCAATTATC


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44


Consensus pattern (13 bp):   
TCAGATTTAGTAT

Found at i:2007 original size:21 final size:21

Alignment explanation


    Indices: 1983--2038  Score: 69
    Period size: 21  Copynumber: 2.7  Consensus size: 21

       1973 AGAATTGTTT

                            *     
       1983 GTGTTTAG-CCATCGTTGATTA
          1 GTGTTT-GTCCATCGTAGATTA

                      *          
       2004 GTGTTTGTCCGTCGTAGATTA
          1 GTGTTTGTCCATCGTAGATTA

              *           
       2025 GTTTTTGTCCATCG
          1 GTGTTTGTCCATCG

       2039 CAAATGCGTA


Statistics
Matches: 30,  Mismatches: 4, Indels: 2
        0.83            0.11        0.06

Matches are distributed among these distances:
  20    1  0.03
  21   29  0.97

ACGTcount: A:0.14, C:0.16, G:0.25, T:0.45


Consensus pattern (21 bp):   
GTGTTTGTCCATCGTAGATTA
Done.