Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010452.1 Corchorus olitorius cultivar O-4 contig10484, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2848
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.35


Found at i:590 original size:23 final size:23

Alignment explanation


    Indices: 540--595  Score: 69
    Period size: 23  Copynumber: 2.4  Consensus size: 23

        530 GGTTAAATTG

                       *       *   
        540 TTGTTAGTTTGGTAAAATGGTTA
          1 TTGTTAGTTTGATAAAATGCTTA

            *                       
        563 CTGTTAGTTTGATAAAAAT-CTTA
          1 TTGTTAGTTTGAT-AAAATGCTTA

                      
        586 TTGTTAGTTT
          1 TTGTTAGTTT

        596 AGTTTTATAT


Statistics
Matches: 28,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
  23   23  0.82
  24    5  0.18

ACGTcount: A:0.27, C:0.04, G:0.20, T:0.50


Consensus pattern (23 bp):   
TTGTTAGTTTGATAAAATGCTTA
Done.