Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010456.1 Corchorus olitorius cultivar O-4 contig10488, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4222
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32


Found at i:713 original size:38 final size:38

Alignment explanation


    Indices: 662--737  Score: 100
    Period size: 38  Copynumber: 2.0  Consensus size: 38

        652 AAGGCCCAAG

                           *   *                   
        662 TCAAGAAACAAACCGTA-CTCAACTCATGAAATAAACCA
          1 TCAAGAAACAAACC-AAGCCCAACTCATGAAATAAACCA

                    *             *               
        700 TCAAGAAATAAACCAAGCCCAAGTCATGAAATAAACCA
          1 TCAAGAAACAAACCAAGCCCAACTCATGAAATAAACCA

        738 AGCCCATGAA


Statistics
Matches: 33,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
  37    1  0.03
  38   32  0.97

ACGTcount: A:0.51, C:0.25, G:0.09, T:0.14


Consensus pattern (38 bp):   
TCAAGAAACAAACCAAGCCCAACTCATGAAATAAACCA
Done.