Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010462.1 Corchorus olitorius cultivar O-4 contig10494, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2872
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38


Found at i:2340 original size:22 final size:22

Alignment explanation


    Indices: 2297--2338  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 22

       2287 TTTCCCTGTT

                                  
       2297 TCGACCTTCATCAGGGTCAAAC
          1 TCGACCTTCATCAGGGTCAAAC

                        *        
       2319 TCGACCTTC-TCTGGGTCAAA
          1 TCGACCTTCATCAGGGTCAAA

       2339 ACAGGGCTGG


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21   10  0.53
  22    9  0.47

ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26


Consensus pattern (22 bp):   
TCGACCTTCATCAGGGTCAAAC
Done.