Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010469.1 Corchorus olitorius cultivar O-4 contig10501, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7981
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34


Found at i:7756 original size:28 final size:28

Alignment explanation


    Indices: 7699--7756  Score: 71
    Period size: 28  Copynumber: 2.1  Consensus size: 28

       7689 TTTTGAATTT

                               ***  *   
       7699 TTAACGTGATGTATACTTTTTTTACCAA
          1 TTAACGTGATGTATACTTTAAATAACAA

                                     *  
       7727 TTAACGTGATGTATACTTTAAATAATAA
          1 TTAACGTGATGTATACTTTAAATAACAA

              
       7755 TT
          1 TT

       7757 TTCATTAAGA


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  28   25  1.00

ACGTcount: A:0.34, C:0.10, G:0.10, T:0.45


Consensus pattern (28 bp):   
TTAACGTGATGTATACTTTAAATAACAA
Done.