Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010489.1 Corchorus olitorius cultivar O-4 contig10521, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1939
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.37


Found at i:1798 original size:26 final size:26

Alignment explanation


    Indices: 1763--1818  Score: 105
    Period size: 26  Copynumber: 2.2  Consensus size: 26

       1753 ACAAACTCAG

                                      
       1763 TACT-TGGCTTTATAATTAGTATAAA
          1 TACTATGGCTTTATAATTAGTATAAA

                                      
       1788 TACTATGGCTTTATAATTAGTATAAA
          1 TACTATGGCTTTATAATTAGTATAAA

                 
       1814 TACTA
          1 TACTA

       1819 GTTAAAGCAA


Statistics
Matches: 30,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
  25    4  0.13
  26   26  0.87

ACGTcount: A:0.38, C:0.09, G:0.11, T:0.43


Consensus pattern (26 bp):   
TACTATGGCTTTATAATTAGTATAAA
Done.