Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001049.1 Corchorus olitorius cultivar O-4 contig01049, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 739

Length: 1233
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.37


Found at i:455 original size:7 final size:7

Alignment explanation


    Indices: 443--471  Score: 51
    Period size: 7  Copynumber: 4.3  Consensus size: 7

        433 TTCTCAATAA

                   
        443 TGTTTTT
          1 TGTTTTT

                   
        450 TGTTTTT
          1 TGTTTTT

                   
        457 TGTTTTT
          1 TGTTTTT

                   
        464 T-TTTTT
          1 TGTTTTT

              
        470 TG
          1 TG

        472 CATAAAACAC


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
   6    6  0.29
   7   15  0.71

ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86


Consensus pattern (7 bp):   
TGTTTTT
Done.