Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010491.1 Corchorus olitorius cultivar O-4 contig10523, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6476

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
625--686
28
2.3
27
85
2
79
48
20
14
16
1.81
1203--2016
30
27.3
30
86
4
1020
47
18
14
19
1.83
1970--2063
47
2.0
47
89
0
143
48
14
15
20
1.80
2017--2263
30
8.5
30
80
8
253
46
17
14
21
1.83
1940--2093
77
2.0
77
96
0
281
48
15
14
21
1.81
1912--2123
107
2.0
108
93
0
363
47
16
14
21
1.82
2137--2180
21
2.1
21
95
0
79
52
13
11
22
1.72
1938--2263
111
3.0
107
84
4
368
47
16
14
21
1.82
2080--2236
81
1.9
81
90
2
253
45
18
14
21
1.85
2470--2900
36
12.2
36
77
8
343
40
18
19
20
1.91
2470--2900
70
6.1
70
75
9
326
40
18
19
20
1.91
4847--4877
2
15.5
2
100
0
62
51
0
0
48
1.00

Tables:   1

The End!