Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010493.1 Corchorus olitorius cultivar O-4 contig10525, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2209
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.37


Found at i:2083 original size:24 final size:24

Alignment explanation


    Indices: 2056--2115  Score: 102
    Period size: 24  Copynumber: 2.5  Consensus size: 24

       2046 ATGGATACTA

                                  * 
       2056 TTATATTCATCTTATATAGATTTC
          1 TTATATTCATCTTATATAGATTAC

                                    
       2080 TTATATTCATCTTATATAGATTAC
          1 TTATATTCATCTTATATAGATTAC

                   *    
       2104 TTATATTAATCT
          1 TTATATTCATCT

       2116 AAAATTATTT


Statistics
Matches: 34,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  24   34  1.00

ACGTcount: A:0.32, C:0.12, G:0.03, T:0.53


Consensus pattern (24 bp):   
TTATATTCATCTTATATAGATTAC
Done.