Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000105.1 Corchorus olitorius cultivar O-4 contig00105, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1734
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33


Found at i:1165 original size:23 final size:23

Alignment explanation


    Indices: 1135--1181  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       1125 ACTTACAGTT

                                   
       1135 ACCGCTTTACTATCAGATAGCCA
          1 ACCGCTTTACTATCAGATAGCCA

                                   
       1158 ACCGCTTTACTATCAGATAGCCA
          1 ACCGCTTTACTATCAGATAGCCA

             
       1181 A
          1 A

       1182 ACAAAATAAG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.32, C:0.30, G:0.13, T:0.26


Consensus pattern (23 bp):   
ACCGCTTTACTATCAGATAGCCA
Done.