Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010500.1 Corchorus olitorius cultivar O-4 contig10532, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4254
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34


Found at i:3726 original size:13 final size:13

Alignment explanation


    Indices: 3696--3748  Score: 60
    Period size: 12  Copynumber: 4.4  Consensus size: 13

       3686 CCCGCTGAGG

                         
       3696 AAATG-TTT-TAT
          1 AAATGCTTTATAT

              *          
       3707 AACTGCTTTATAT
          1 AAATGCTTTATAT

                         
       3720 AAATGCTTTATA-
          1 AAATGCTTTATAT

                 *       
       3732 AAATGTTTTA-AT
          1 AAATGCTTTATAT

                 
       3744 AAATG
          1 AAATG

       3749 TTTTGGGTGC


Statistics
Matches: 36,  Mismatches: 3, Indels: 5
        0.82            0.07        0.11

Matches are distributed among these distances:
  11    5  0.14
  12   17  0.47
  13   14  0.39

ACGTcount: A:0.40, C:0.06, G:0.09, T:0.45


Consensus pattern (13 bp):   
AAATGCTTTATAT

Done.