Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010503.1 Corchorus olitorius cultivar O-4 contig10535, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 916

Length: 1528
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28


Found at i:767 original size:21 final size:21

Alignment explanation


    Indices: 708--774  Score: 62
    Period size: 21  Copynumber: 3.1  Consensus size: 21

        698 CCAAGCCATT

                     *            
        708 ACCGGCCATTCACCGTGCCACC
          1 ACCGGCCATGC-CCGTGCCACC

                 ** *   *        
        730 ACCGGTTAAGCCTGTGCCACC
          1 ACCGGCCATGCCCGTGCCACC

              *                * 
        751 ACTGGCCATGCCCGTGCCATC
          1 ACCGGCCATGCCCGTGCCACC

               
        772 ACC
          1 ACC

        775 ATTCCAAGCC


Statistics
Matches: 33,  Mismatches: 12, Indels: 1
        0.72            0.26        0.02

Matches are distributed among these distances:
  21   26  0.79
  22    7  0.21

ACGTcount: A:0.18, C:0.45, G:0.21, T:0.16


Consensus pattern (21 bp):   
ACCGGCCATGCCCGTGCCACC
Done.