Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010505.1 Corchorus olitorius cultivar O-4 contig10537, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2724
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.34

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:552 original size:13 final size:14

Alignment explanation


    Indices: 531--572  Score: 50
    Period size: 13  Copynumber: 3.1  Consensus size: 14

        521 AATGAAACCT

                          
        531 ACAAAATATAATTA
          1 ACAAAATATAATTA

                     * *  
        545 AC-AAATATTACTA
          1 ACAAAATATAATTA

                  *       
        558 ACAAAAAATAATTA
          1 ACAAAATATAATTA

             
        572 A
          1 A

        573 TTTGCCTAAT


Statistics
Matches: 22,  Mismatches: 5, Indels: 2
        0.76            0.17        0.07

Matches are distributed among these distances:
  13   11  0.50
  14   11  0.50

ACGTcount: A:0.64, C:0.10, G:0.00, T:0.26


Consensus pattern (14 bp):   
ACAAAATATAATTA

Found at i:1323 original size:36 final size:36

Alignment explanation


    Indices: 1275--1348  Score: 139
    Period size: 36  Copynumber: 2.1  Consensus size: 36

       1265 TATAGTGTAG

                                                
       1275 TAACAAACGGGAACTGAAGAAAGGATTTGAATGGAT
          1 TAACAAACGGGAACTGAAGAAAGGATTTGAATGGAT

                   *                            
       1311 TAACAAATGGGAACTGAAGAAAGGATTTGAATGGAT
          1 TAACAAACGGGAACTGAAGAAAGGATTTGAATGGAT

              
       1347 TA
          1 TA

       1349 GATTAAGGGG


Statistics
Matches: 37,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  36   37  1.00

ACGTcount: A:0.45, C:0.07, G:0.27, T:0.22


Consensus pattern (36 bp):   
TAACAAACGGGAACTGAAGAAAGGATTTGAATGGAT
Done.