Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01010510.1 Corchorus olitorius cultivar O-4 contig10542, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12493

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1853--1924
22
3.4
20
74
11
56
37
16
11
34
1.84
1891--1969
22
3.7
21
88
3
106
43
17
12
26
1.85
3388--3443
22
2.5
22
79
0
67
37
17
8
35
1.82
3431--3502
22
3.2
22
75
21
76
43
8
16
31
1.78
3628--3678
22
2.3
21
80
9
57
37
7
17
37
1.79
3644--3690
22
2.1
22
88
0
67
38
10
19
31
1.86
3691--3750
22
2.7
22
82
5
68
35
13
18
33
1.89
3720--3781
31
2.0
31
96
0
115
33
12
14
38
1.84
3776--3830
28
1.9
29
89
10
87
43
7
7
41
1.60
3646--3852
53
3.9
51
75
11
152
36
10
15
37
1.83
3804--4204
22
18.1
22
68
11
140
39
10
15
34
1.82
3962--4056
45
2.1
45
84
1
120
36
11
18
32
1.87
9327--9410
41
2.1
41
84
2
107
51
11
3
33
1.56
9733--9795
21
3.0
21
79
9
58
49
9
6
34
1.61
9823--9869
23
2.0
23
91
0
76
59
2
6
31
1.34
12412--12482
37
1.9
37
94
0
124
21
28
15
35
1.94

Tables:   1

The End!