Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010514.1 Corchorus olitorius cultivar O-4 contig10546, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1751
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.38


Found at i:798 original size:49 final size:49

Alignment explanation


    Indices: 739--834  Score: 156
    Period size: 49  Copynumber: 2.0  Consensus size: 49

        729 TGGCAATATA

                               * *   *                       
        739 TATTTCAATTATTTATAAATGTATATTCAAAATGAAAAAAGAAAAAAGC
          1 TATTTCAATTATTTATAAAAGAATAATCAAAATGAAAAAAGAAAAAAGC

                                             *             
        788 TATTTCAATTATTTATAAAAGAATAATCAAAATTAAAAAAGAAAAAA
          1 TATTTCAATTATTTATAAAAGAATAATCAAAATGAAAAAAGAAAAAA

        835 TCTGAAAATA


Statistics
Matches: 43,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  49   43  1.00

ACGTcount: A:0.57, C:0.05, G:0.06, T:0.31


Consensus pattern (49 bp):   
TATTTCAATTATTTATAAAAGAATAATCAAAATGAAAAAAGAAAAAAGC
Done.