Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010515.1 Corchorus olitorius cultivar O-4 contig10547, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2637
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27


Found at i:1513 original size:13 final size:13

Alignment explanation


    Indices: 1476--1532  Score: 68
    Period size: 12  Copynumber: 4.7  Consensus size: 13

       1466 TTATGCACCC

                         
       1476 AAAACATTTAT-T
          1 AAAACATTTATAT

                         
       1488 AAAACATTT-TAT
          1 AAAACATTTATAT

               *         
       1500 AAAGCATTTATAT
          1 AAAACATTTATAT

                   *     
       1513 AAAACA-GT-TAT
          1 AAAACATTTATAT

                     
       1524 AAAACATTT
          1 AAAACATTT

       1533 CCTCAACGGG


Statistics
Matches: 38,  Mismatches: 4, Indels: 6
        0.79            0.08        0.12

Matches are distributed among these distances:
  11   10  0.26
  12   20  0.53
  13    8  0.21

ACGTcount: A:0.51, C:0.09, G:0.04, T:0.37


Consensus pattern (13 bp):   
AAAACATTTATAT

Found at i:1523 original size:24 final size:24

Alignment explanation


    Indices: 1476--1532  Score: 80
    Period size: 24  Copynumber: 2.4  Consensus size: 24

       1466 TTATGCACCC

                               *    
       1476 AAAACATTTATTAAAACATTTTAT
          1 AAAACATTTATTAAAACATGTTAT

               *                     
       1500 AAAGCATTTATATAAAACA-GTTAT
          1 AAAACATTTAT-TAAAACATGTTAT

                     
       1524 AAAACATTT
          1 AAAACATTT

       1533 CCTCAACGGG


Statistics
Matches: 29,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
  24   22  0.76
  25    7  0.24

ACGTcount: A:0.51, C:0.09, G:0.04, T:0.37


Consensus pattern (24 bp):   
AAAACATTTATTAAAACATGTTAT
Done.