Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010518.1 Corchorus olitorius cultivar O-4 contig10550, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3996
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36


Found at i:2659 original size:14 final size:15

Alignment explanation


    Indices: 2630--2663  Score: 52
    Period size: 14  Copynumber: 2.3  Consensus size: 15

       2620 TATATTATTT

                   *       
       2630 TTAATATTTAATATA
          1 TTAATATATAATATA

                           
       2645 TTAATATAT-ATATA
          1 TTAATATATAATATA

                 
       2659 TTAAT
          1 TTAAT

       2664 TTGAAATAAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  14   10  0.56
  15    8  0.44

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (15 bp):   
TTAATATATAATATA
Done.