Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010520.1 Corchorus olitorius cultivar O-4 contig10552, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3163
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.31


Found at i:1981 original size:32 final size:32

Alignment explanation


    Indices: 1940--2005  Score: 114
    Period size: 32  Copynumber: 2.1  Consensus size: 32

       1930 CATGGTTCGG

                      *           *         
       1940 GCAAGCATCGGCATCAGCAGGCTAGCCCGCGC
          1 GCAAGCATCGACATCAGCAGGCCAGCCCGCGC

                                            
       1972 GCAAGCATCGACATCAGCAGGCCAGCCCGCGC
          1 GCAAGCATCGACATCAGCAGGCCAGCCCGCGC

              
       2004 GC
          1 GC

       2006 CAGGCAGCAG


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  32   32  1.00

ACGTcount: A:0.23, C:0.39, G:0.30, T:0.08


Consensus pattern (32 bp):   
GCAAGCATCGACATCAGCAGGCCAGCCCGCGC
Done.