Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010527.1 Corchorus olitorius cultivar O-4 contig10559, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 887

Length: 1479
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.39


Found at i:362 original size:210 final size:209

Alignment explanation


    Indices: 1--393  Score: 752
    Period size: 210  Copynumber: 1.9  Consensus size: 209

                                                                             
          1 TGTACACTACAAATATGGAAACCTTTAAATGTTGAGGCCTCCAAATCTCGACACGTGTCTCTAAT
          1 TGTACACTACAAATATGGAAACCTTTAAATGTTGAGGCCTCCAAATCTCGACACGTGTCTCTAAT

                                                                             
         66 TAATTCTAATATTCATTATATTGATATATTGATTAGAAAAAAGCCTTTGGTATATTTTAAGAAAG
         66 TAATTCTAATATTCATTATATTGATATATTGATTAGAAAAAAGCCTTTGGTATATTTTAAGAAAG

                                                                             
        131 AACAATAATTTCTCTTACAAA-TTTGTAAGATTTTAATTAAAAAATAAAGAAATCATATATATAT
        131 AACAATAATTTCTCTTACAAATTTTGTAA-ATTTTAATTAAAAAATAAAGAAATCATATATATAT

                           
        195 ATATAATGATAACAA
        195 ATATAATGATAACAA

                                                                             
        210 TGTACACTACAAATATGGAAACTCTTTAAATGTTGAGGCCTCCAAATCTCGACACGTGTCTCTAA
          1 TGTACACTACAAATATGGAAAC-CTTTAAATGTTGAGGCCTCCAAATCTCGACACGTGTCTCTAA

                                                                             
        275 TTAATTCTAATATTCATTATATTGATATATTGATTAGAAAAAAGCCTTTGGTATATTTTAAGAAA
         65 TTAATTCTAATATTCATTATATTGATATATTGATTAGAAAAAAGCCTTTGGTATATTTTAAGAAA

                                      *                           
        340 GAACAATAATTTCTCTTACAAATTTTTTAAATTTTAATTAAAAAATAAAGAAAT
        130 GAACAATAATTTCTCTTACAAATTTTGTAAATTTTAATTAAAAAATAAAGAAAT

        394 TAATAATGAA


Statistics
Matches: 181,  Mismatches: 1, Indels: 3
        0.98            0.01        0.02

Matches are distributed among these distances:
 209   22  0.12
 210  153  0.85
 211    6  0.03

ACGTcount: A:0.41, C:0.12, G:0.10, T:0.36


Consensus pattern (209 bp):   
TGTACACTACAAATATGGAAACCTTTAAATGTTGAGGCCTCCAAATCTCGACACGTGTCTCTAAT
TAATTCTAATATTCATTATATTGATATATTGATTAGAAAAAAGCCTTTGGTATATTTTAAGAAAG
AACAATAATTTCTCTTACAAATTTTGTAAATTTTAATTAAAAAATAAAGAAATCATATATATATA
TATAATGATAACAA
Done.