Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001053.1 Corchorus olitorius cultivar O-4 contig01053, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 602

Length: 1004
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32


Found at i:793 original size:61 final size:61

Alignment explanation


    Indices: 698--820  Score: 246
    Period size: 61  Copynumber: 2.0  Consensus size: 61

        688 TTTGGTAGAT

                                                                         
        698 ACTCTCCTCTATTGTGTGTTTAGTTTTCAGGATAATAATGCTTGCAAAATACTTACAAATC
          1 ACTCTCCTCTATTGTGTGTTTAGTTTTCAGGATAATAATGCTTGCAAAATACTTACAAATC

                                                                         
        759 ACTCTCCTCTATTGTGTGTTTAGTTTTCAGGATAATAATGCTTGCAAAATACTTACAAATC
          1 ACTCTCCTCTATTGTGTGTTTAGTTTTCAGGATAATAATGCTTGCAAAATACTTACAAATC

             
        820 A
          1 A

        821 TTTTTACTGA


Statistics
Matches: 62,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  61   62  1.00

ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39


Consensus pattern (61 bp):   
ACTCTCCTCTATTGTGTGTTTAGTTTTCAGGATAATAATGCTTGCAAAATACTTACAAATC
Done.