Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010530.1 Corchorus olitorius cultivar O-4 contig10562, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5159
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26


Found at i:703 original size:15 final size:15

Alignment explanation


    Indices: 670--711  Score: 57
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        660 TTACTTTGCT

                          * 
        670 TTGTTTTCTAGTTTCA
          1 TTGTTTTCT-GTTTAA

                           
        686 TTGTTTTCTGTTTAA
          1 TTGTTTTCTGTTTAA

               *       
        701 TTGCTTTCTGT
          1 TTGTTTTCTGT

        712 CAACCTCTGT


Statistics
Matches: 24,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  15   15  0.62
  16    9  0.38

ACGTcount: A:0.10, C:0.12, G:0.14, T:0.64


Consensus pattern (15 bp):   
TTGTTTTCTGTTTAA
Done.