Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010531.1 Corchorus olitorius cultivar O-4 contig10563, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1704
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29


Found at i:1086 original size:15 final size:15

Alignment explanation


    Indices: 1068--1114  Score: 51
    Period size: 17  Copynumber: 3.0  Consensus size: 15

       1058 CAGTTGGTCC

                           
       1068 GAGAGAGTGTGGTGA
          1 GAGAGAGTGTGGTGA

                              
       1083 GAGAGGGAG-GTTGGTGA
          1 GAGA--GAGTG-TGGTGA

                     *     
       1100 GAGAGAGTGAGGTGA
          1 GAGAGAGTGTGGTGA

       1115 TCGTGAAGGG


Statistics
Matches: 27,  Mismatches: 1, Indels: 8
        0.75            0.03        0.22

Matches are distributed among these distances:
  15   12  0.44
  16    2  0.07
  17   13  0.48

ACGTcount: A:0.28, C:0.00, G:0.55, T:0.17


Consensus pattern (15 bp):   
GAGAGAGTGTGGTGA
Done.