Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010535.1 Corchorus olitorius cultivar O-4 contig10567, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2732
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--58  Score: 107
    Period size: 2  Copynumber: 29.0  Consensus size: 2

                                                                         *
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GN
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA

                                   
         43 GA GA GA GA GA GA GA GA
          1 GA GA GA GA GA GA GA GA

         59 AAGGAGGGAA


Statistics
Matches: 54,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   2   54  1.00

ACGTcount: A:0.48, C:0.00, G:0.50, T:0.00


Consensus pattern (2 bp):   
GA

Done.