Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010536.1 Corchorus olitorius cultivar O-4 contig10568, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2551
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35


Found at i:202 original size:27 final size:27

Alignment explanation


    Indices: 146--196  Score: 77
    Period size: 27  Copynumber: 1.9  Consensus size: 27

        136 CCCATCATGA

                              *   *    
        146 AAATTACCGTTTTGCCCTTTGTCGAAT
          1 AAATTACCGTTTTGCCCTCTGTAGAAT

                                     
        173 AAATTACCGTTTTGCCC-CTGTAGA
          1 AAATTACCGTTTTGCCCTCTGTAGA

        197 CCTAAAATAA


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  26    5  0.23
  27   17  0.77

ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37


Consensus pattern (27 bp):   
AAATTACCGTTTTGCCCTCTGTAGAAT
Done.