Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001054.1 Corchorus olitorius cultivar O-4 contig01054, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2150
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32


Found at i:63 original size:40 final size:40

Alignment explanation


    Indices: 8--88  Score: 162
    Period size: 40  Copynumber: 2.0  Consensus size: 40

          1 ATTTTGA

                                                    
          8 AAACTTCCCTACCACGAGAAATTATTAGATGAAAACAACC
          1 AAACTTCCCTACCACGAGAAATTATTAGATGAAAACAACC

                                                    
         48 AAACTTCCCTACCACGAGAAATTATTAGATGAAAACAACC
          1 AAACTTCCCTACCACGAGAAATTATTAGATGAAAACAACC

             
         88 A
          1 A

         89 TGACACTATT


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  40   41  1.00

ACGTcount: A:0.46, C:0.25, G:0.10, T:0.20


Consensus pattern (40 bp):   
AAACTTCCCTACCACGAGAAATTATTAGATGAAAACAACC
Done.