Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010540.1 Corchorus olitorius cultivar O-4 contig10572, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 850

Length: 1417
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36


Found at i:1172 original size:12 final size:11

Alignment explanation


    Indices: 1154--1188  Score: 54
    Period size: 10  Copynumber: 3.2  Consensus size: 11

       1144 GGCCAAACGC

                       
       1154 GAAAAAAAAAA
          1 GAAAAAAAAAA

                       
       1165 G-AAAAAAAAA
          1 GAAAAAAAAAA

                        
       1175 GTAAAAAAAAAA
          1 G-AAAAAAAAAA

              
       1187 GA
          1 GA

       1189 GGTTTTTAAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  10   10  0.45
  11    2  0.09
  12   10  0.45

ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03


Consensus pattern (11 bp):   
GAAAAAAAAAA
Done.