Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01010543.1 Corchorus olitorius cultivar O-4 contig10575, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1726
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31


Found at i:707 original size:25 final size:25

Alignment explanation


    Indices: 679--757  Score: 92
    Period size: 25  Copynumber: 3.2  Consensus size: 25

        669 TGCGCTGAGC

                  *                  
        679 AAACGCGTCCGTGCTTGCGTTTGGA
          1 AAACGCATCCGTGCTTGCGTTTGGA

                   *                  
        704 AAACG-AACCTGTGCTTGCGTTTGGA
          1 AAACGCATCC-GTGCTTGCGTTTGGA

                                       
        729 AAACGAACAT--GTGCTTGCGTTTGGA
          1 AAACG--CATCCGTGCTTGCGTTTGGA

                
        754 AAAC
          1 AAAC

        758 ACATAGGTTG


Statistics
Matches: 47,  Mismatches: 3, Indels: 8
        0.81            0.05        0.14

Matches are distributed among these distances:
  24    2  0.04
  25   44  0.94
  28    1  0.02

ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27


Consensus pattern (25 bp):   
AAACGCATCCGTGCTTGCGTTTGGA
Done.